(2020). Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array. SEANOE. https://doi.org/10.17882/75696
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Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array
Four experimental backcross full-sib families (378, 454, 291 and 211 individuals) were produced by in vitro fertilization at Ifremer (Palavas-les-Flots, France). All 1334 individuals were genotyped with a ThermoFisher AxiomTM Sea Bass 57k SNP DlabChip at the genotyping platform Gentyane (INRAE, Clermont-Ferrand, France). SNP calling was done using ThermoFisher software AxiomAnalysisSuiteTM. Preliminary quality controls were applied with threshold values of 95% for SNP call rate and 90% for sample call rate.
Disciplines
Fisheries and aquaculture
Keywords
DLabCHIP, Genotype, European sea bass, Backcross families
Data
| File | Size | Format | Processing | Access | |
|---|---|---|---|---|---|
BED (PLINK binary biallelic genotype table) file for backcross families genotypes | 15 Mo | BED | Quality controlled data | ||
BIM (PLINK extended MAP file) file for backcross families genotypes | 1 Mo | BIM | Quality controlled data | ||
FAM (PLINK sample information file) file for backcross families genotypes | 34 Ko | FAM | Quality controlled data |
How to cite
Allal Francois
